{
  "_id": "6a4797a32f27a93436c0f658",
  "Type": "Package",
  "Package": "dsmmR",
  "Title": "Estimation and Simulation of Drifting Semi-Markov Models",
  "Version": "1.0.7",
  "Date": "2025-07-08",
  "Authors@R": "c(\nperson(\"Vlad Stefan\", \"Barbu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-0840-016X\")),\nperson(\"Ioannis\", \"Mavrogiannis\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mavrogiannis.ioa@gmail.com\",\ncomment = c(ORCID = \"0000-0002-2948-0648\")),\nperson(\"Nicolas\", \"Vergne\",\nrole = c(\"aut\"))\n)",
  "Description": "Performs parametric and non-parametric estimation and\nsimulation of drifting semi-Markov processes. The definition of\nparametric and non-parametric model specifications is also\npossible. Furthermore, three different types of drifting\nsemi-Markov models are considered. These models differ in the\nnumber of transition matrices and sojourn time distributions\nused for the computation of a number of semi-Markov kernels,\nwhich in turn characterize the drifting semi-Markov kernel. For\nthe parametric model estimation and specification, several\ndiscrete distributions are considered for the sojourn times:\nUniform, Poisson, Geometric, Discrete Weibull and Negative\nBinomial. The non-parametric model specification makes no\nassumptions about the shape of the sojourn time distributions.\nSemi-Markov models are described in: Barbu, V.S., Limnios, N.\n(2008) <doi:10.1007/978-0-387-73173-5>. Drifting Markov models\nare described in: Vergne, N. (2008)\n<doi:10.2202/1544-6115.1326>. Reliability indicators of\nDrifting Markov models are described in: Barbu, V. S., Vergne,\nN. (2019) <doi:10.1007/s11009-018-9682-8>. We acknowledge the\nDATALAB Project\n<https://lmrs-num.math.cnrs.fr/projet-datalab.html> (financed\nby the European Union with the European Regional Development\nfund (ERDF) and by the Normandy Region) and the HSMM-INCA\nProject (financed by the French Agence Nationale de la\nRecherche (ANR) under grant ANR-21-CE40-0005).",
  "License": "GPL",
  "URL": "https://github.com/Mavrogiannis-Ioannis/dsmmR",
  "BugReports": "https://github.com/Mavrogiannis-Ioannis/dsmmR/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Repository": "https://mavrogiannis-ioannis.r-universe.dev",
  "Date/Publication": "2025-07-08 08:18:11 UTC",
  "RemoteUrl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "RemoteRef": "HEAD",
  "RemoteSha": "66ee5795eee1ca3355196b948ea2013b45428808",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 07:43:15 UTC",
    "User": "root"
  },
  "Author": "Vlad Stefan Barbu [aut] (ORCID:\n<https://orcid.org/0000-0002-0840-016X>),\nIoannis Mavrogiannis [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2948-0648>),\nNicolas Vergne [aut]",
  "Maintainer": "Ioannis Mavrogiannis <mavrogiannis.ioa@gmail.com>",
  "_user": "mavrogiannis-ioannis",
  "_type": "src",
  "_file": "dsmmR_1.0.7.tar.gz",
  "_fileid": "https://r2.ropensci.org/a65449ff62ee22499cb8f10839cce6d4faaa94f46acb5c7dc74e26948e777327",
  "_filesize": 448050,
  "_sha256": "a65449ff62ee22499cb8f10839cce6d4faaa94f46acb5c7dc74e26948e777327",
  "_expires": "2026-10-11T11:06:10.000Z",
  "_created": "2026-07-03T07:43:15.000Z",
  "_published": "2026-07-03T11:06:11.230Z",
  "_jobs": [
    {
      "job": 84986774801,
      "time": 177,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8060770640"
    },
    {
      "job": 84986775670,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8060750781"
    },
    {
      "job": 84986775540,
      "time": 135,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8060745897"
    },
    {
      "job": 84986775400,
      "time": 162,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8060751111"
    },
    {
      "job": 84986774602,
      "time": 189,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8060706844"
    },
    {
      "job": 84986775689,
      "time": 139,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8060754348"
    },
    {
      "job": 84986774918,
      "time": 75,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8060733640"
    },
    {
      "job": 84986774989,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8060732201"
    },
    {
      "job": 84986775619,
      "time": 72,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8060733102"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644",
  "_status": "success",
  "_upstream": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_commit": {
    "id": "66ee5795eee1ca3355196b948ea2013b45428808",
    "author": "Mavrogiannis-Ioannis <mavrogiannis.ioa@gmail.com>",
    "committer": "Mavrogiannis-Ioannis <mavrogiannis.ioa@gmail.com>",
    "message": "for CRAN\n",
    "time": 1751962691
  },
  "_maintainer": {
    "name": "Ioannis Mavrogiannis",
    "email": "mavrogiannis.ioa@gmail.com",
    "login": "mavrogiannis-ioannis",
    "linkedin": "in/ioannis-mavrogiannis",
    "description": "Uncertainty Quantification in Nuclear Fusion Plasmas || PhD candidate at M2P2 laboratory, Marseille, France.",
    "uuid": 115942286,
    "orcid": "0000-0002-2948-0648"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "DiscreteWeibull",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "mavrogiannis-ioannis",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mavrogiannis-ioannis",
      "count": 180,
      "uuid": 115942286
    },
    {
      "user": "bisaloo",
      "count": 4,
      "uuid": 10783929
    },
    {
      "user": "olivroy",
      "count": 1,
      "uuid": 52606734
    }
  ],
  "_userbio": {
    "uuid": 115942286,
    "type": "user",
    "name": "Ioannis Mavrogiannis",
    "followers": 3,
    "description": "Uncertainty Quantification in Nuclear Fusion Plasmas || PhD candidate at M2P2 laboratory, Marseille, France."
  },
  "_downloads": {
    "count": 209,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dsmmR"
  },
  "_devurl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/dsmmR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_realowner": "mavrogiannis-ioannis",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.96",
      "date": "2022-11-16"
    },
    {
      "version": "1.0.1",
      "date": "2023-02-04"
    },
    {
      "version": "1.0.2",
      "date": "2023-09-01"
    },
    {
      "version": "1.0.5",
      "date": "2024-07-28"
    },
    {
      "version": "1.0.7",
      "date": "2025-07-08"
    }
  ],
  "_exports": [
    "create_sequence",
    "fit_dsmm",
    "get_kernel",
    "is.dsmm",
    "is.dsmm_fit_nonparametric",
    "is.dsmm_fit_parametric",
    "is.dsmm_nonparametric",
    "is.dsmm_parametric",
    "nonparametric_dsmm",
    "parametric_dsmm"
  ],
  "_datasets": [
    {
      "name": "lambda",
      "title": "lambda genome",
      "object": "lambda",
      "file": "lambda.rda",
      "class": [
        "SeqFastadna"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "dsmmR-package",
      "title": "dsmmR : Estimation and Simulation of Drifting Semi-Markov Models",
      "topics": [
        "dsmmR-package",
        "dsmmR"
      ]
    },
    {
      "page": "create_sequence",
      "title": "Simulate a sequence for states of choice.",
      "topics": [
        "create_sequence"
      ]
    },
    {
      "page": "fit_dsmm",
      "title": "Estimation of a drifting semi-Markov chain",
      "topics": [
        "dsmm_fit",
        "fit_dsmm"
      ]
    },
    {
      "page": "get_kernel",
      "title": "Obtain the Drifting semi-Markov kernel",
      "topics": [
        "get_kernel"
      ]
    },
    {
      "page": "is.dsmm",
      "title": "Check if an object has a valid 'dsmm' class",
      "topics": [
        "is.dsmm"
      ]
    },
    {
      "page": "is.dsmm_fit_nonparametric",
      "title": "Check if an object has a valid 'dsmm_fit_nonparametric' class",
      "topics": [
        "is.dsmm_fit_nonparametric"
      ]
    },
    {
      "page": "is.dsmm_fit_parametric",
      "title": "Check if an object has a valid 'dsmm_fit_parametric' class",
      "topics": [
        "is.dsmm_fit_parametric"
      ]
    },
    {
      "page": "is.dsmm_nonparametric",
      "title": "Check if an object has a valid 'dsmm_nonparametric' class",
      "topics": [
        "is.dsmm_nonparametric"
      ]
    },
    {
      "page": "is.dsmm_parametric",
      "title": "Check if an object has a valid 'dsmm_parametric' class",
      "topics": [
        "is.dsmm_parametric"
      ]
    },
    {
      "page": "lambda",
      "title": "lambda genome",
      "topics": [
        "lambda"
      ]
    },
    {
      "page": "nonparametric_dsmm",
      "title": "Non-parametric Drifting semi-Markov model specification",
      "topics": [
        "dsmm_nonparametric",
        "nonparametric",
        "nonparametric_dsmm"
      ]
    },
    {
      "page": "parametric_dsmm",
      "title": "Parametric Drifting semi-Markov model specification",
      "topics": [
        "dsmm_parametric",
        "parametric",
        "parametric_dsmm"
      ]
    },
    {
      "page": "simulate.dsmm",
      "title": "Simulate a sequence given a drifting semi-Markov kernel.",
      "topics": [
        "dsmm_simulate",
        "simulate.dsmm"
      ]
    }
  ],
  "_readme": "https://github.com/mavrogiannis-ioannis/dsmmr/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "digest",
    "DiscreteWeibull",
    "future",
    "future.apply",
    "globals",
    "listenv",
    "numDeriv",
    "parallelly",
    "Rcpp",
    "RcppArmadillo",
    "Rsolnp",
    "truncnorm"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "dsmmr",
  "_universes": [
    "mavrogiannis-ioannis"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-07-03T07:46:14.000Z",
      "distro": "resolute",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/a4639fda3a5f57c5877d92d6873be8f79a7a0c79abe8a8177763badac1be6fec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-07-03T07:45:20.000Z",
      "distro": "resolute",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/e8b4a73b74ba893b362fb5fe9cba2a6e1fd194d3a406948ac967291b31e8da8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-07-03T07:45:12.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/5474660a009f806bc6fd5fbed4d161737461152a010a16f6b643e49ead290867",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-07-03T07:45:22.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/b4e0327aafa60d5d50278dbd2178df2edf32ae0eb549577a2907ee06ae846522",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.7",
      "date": "2026-07-03T07:45:47.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/2e68f6064592872de9266e63b931cdb0d8a53e128b37c7573f46843c053ebff6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-07-03T07:44:26.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/63ba452ed3284d8f811fd1c824229d4a3633ec54d9331683f13ab330b68bbe07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-07-03T07:44:22.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/c127d2417eeab77b3562ff405b9f1f7a2a0bb7da52dbc2395fa8429105b05310",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-07-03T07:44:25.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "https://r2.ropensci.org/defa39ff511093a70e192a8dc2cc11f9c7b6b2eaeed1e4ad58b611a49ed61837",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/28646028644"
    }
  ]
}