{
  "_id": "6a1ffc29b401979e73444b2b",
  "Type": "Package",
  "Package": "dsmmR",
  "Title": "Estimation and Simulation of Drifting Semi-Markov Models",
  "Version": "1.0.7",
  "Date": "2025-07-08",
  "Authors@R": "c(\nperson(\"Vlad Stefan\", \"Barbu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-0840-016X\")),\nperson(\"Ioannis\", \"Mavrogiannis\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mavrogiannis.ioa@gmail.com\",\ncomment = c(ORCID = \"0000-0002-2948-0648\")),\nperson(\"Nicolas\", \"Vergne\",\nrole = c(\"aut\"))\n)",
  "Description": "Performs parametric and non-parametric estimation and\nsimulation of drifting semi-Markov processes. The definition of\nparametric and non-parametric model specifications is also\npossible. Furthermore, three different types of drifting\nsemi-Markov models are considered. These models differ in the\nnumber of transition matrices and sojourn time distributions\nused for the computation of a number of semi-Markov kernels,\nwhich in turn characterize the drifting semi-Markov kernel. For\nthe parametric model estimation and specification, several\ndiscrete distributions are considered for the sojourn times:\nUniform, Poisson, Geometric, Discrete Weibull and Negative\nBinomial. The non-parametric model specification makes no\nassumptions about the shape of the sojourn time distributions.\nSemi-Markov models are described in: Barbu, V.S., Limnios, N.\n(2008) <doi:10.1007/978-0-387-73173-5>. Drifting Markov models\nare described in: Vergne, N. (2008)\n<doi:10.2202/1544-6115.1326>. Reliability indicators of\nDrifting Markov models are described in: Barbu, V. S., Vergne,\nN. (2019) <doi:10.1007/s11009-018-9682-8>. We acknowledge the\nDATALAB Project\n<https://lmrs-num.math.cnrs.fr/projet-datalab.html> (financed\nby the European Union with the European Regional Development\nfund (ERDF) and by the Normandy Region) and the HSMM-INCA\nProject (financed by the French Agence Nationale de la\nRecherche (ANR) under grant ANR-21-CE40-0005).",
  "License": "GPL",
  "URL": "https://github.com/Mavrogiannis-Ioannis/dsmmR",
  "BugReports": "https://github.com/Mavrogiannis-Ioannis/dsmmR/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Repository": "https://mavrogiannis-ioannis.r-universe.dev",
  "Date/Publication": "2025-07-08 08:18:11 UTC",
  "RemoteUrl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "RemoteRef": "HEAD",
  "RemoteSha": "66ee5795eee1ca3355196b948ea2013b45428808",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 10:00:29 UTC",
    "User": "root"
  },
  "Author": "Vlad Stefan Barbu [aut] (ORCID:\n<https://orcid.org/0000-0002-0840-016X>),\nIoannis Mavrogiannis [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2948-0648>),\nNicolas Vergne [aut]",
  "Maintainer": "Ioannis Mavrogiannis <mavrogiannis.ioa@gmail.com>",
  "MD5sum": "124cbfa419265a07fb0e72008fff4453",
  "_user": "mavrogiannis-ioannis",
  "_type": "src",
  "_file": "dsmmR_1.0.7.tar.gz",
  "_fileid": "b2e5c3a8319c739611267d2413ca68e3a5d35442ec2e1e9a6a1dc9cfe23fa9f8",
  "_filesize": 445906,
  "_sha256": "b2e5c3a8319c739611267d2413ca68e3a5d35442ec2e1e9a6a1dc9cfe23fa9f8",
  "_created": "2026-06-03T10:00:29.000Z",
  "_published": "2026-06-03T10:04:25.806Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79268983991,
      "time": 118,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7381514612"
    },
    {
      "job": 79268984033,
      "time": 148,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7381526717"
    },
    {
      "job": 79268983944,
      "time": 137,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7381515100"
    },
    {
      "job": 79268983952,
      "time": 126,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7381508710"
    },
    {
      "job": 79268490212,
      "time": 164,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7381469418"
    },
    {
      "job": 79268983960,
      "time": 196,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7381543652"
    },
    {
      "job": 79268984007,
      "time": 120,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7381515465"
    },
    {
      "job": 79268984159,
      "time": 73,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7381497783"
    },
    {
      "job": 79268984013,
      "time": 75,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7381498927"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_commit": {
    "id": "66ee5795eee1ca3355196b948ea2013b45428808",
    "author": "Mavrogiannis-Ioannis <mavrogiannis.ioa@gmail.com>",
    "committer": "Mavrogiannis-Ioannis <mavrogiannis.ioa@gmail.com>",
    "message": "for CRAN\n",
    "time": 1751962691
  },
  "_maintainer": {
    "name": "Ioannis Mavrogiannis",
    "email": "mavrogiannis.ioa@gmail.com",
    "login": "mavrogiannis-ioannis",
    "linkedin": "in/ioannis-mavrogiannis",
    "description": "Uncertainty Quantification in Nuclear Fusion Plasmas || PhD candidate at M2P2 laboratory, Marseille, France.",
    "uuid": 115942286,
    "orcid": "0000-0002-2948-0648"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "DiscreteWeibull",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "mavrogiannis-ioannis",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mavrogiannis-ioannis",
      "count": 180,
      "uuid": 115942286
    },
    {
      "user": "bisaloo",
      "count": 4,
      "uuid": 10783929
    },
    {
      "user": "olivroy",
      "count": 1,
      "uuid": 52606734
    }
  ],
  "_userbio": {
    "uuid": 115942286,
    "type": "user",
    "name": "Ioannis Mavrogiannis",
    "description": "Uncertainty Quantification in Nuclear Fusion Plasmas || PhD candidate at M2P2 laboratory, Marseille, France."
  },
  "_downloads": {
    "count": 138,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dsmmR"
  },
  "_devurl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/dsmmR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mavrogiannis-ioannis/dsmmr",
  "_realowner": "mavrogiannis-ioannis",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.96",
      "date": "2022-11-16"
    },
    {
      "version": "1.0.1",
      "date": "2023-02-04"
    },
    {
      "version": "1.0.2",
      "date": "2023-09-01"
    },
    {
      "version": "1.0.5",
      "date": "2024-07-28"
    },
    {
      "version": "1.0.7",
      "date": "2025-07-08"
    }
  ],
  "_exports": [
    "create_sequence",
    "fit_dsmm",
    "get_kernel",
    "is.dsmm",
    "is.dsmm_fit_nonparametric",
    "is.dsmm_fit_parametric",
    "is.dsmm_nonparametric",
    "is.dsmm_parametric",
    "nonparametric_dsmm",
    "parametric_dsmm"
  ],
  "_datasets": [
    {
      "name": "lambda",
      "title": "lambda genome",
      "object": "lambda",
      "file": "lambda.rda",
      "class": [
        "SeqFastadna"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "dsmmR-package",
      "title": "dsmmR : Estimation and Simulation of Drifting Semi-Markov Models",
      "topics": [
        "dsmmR-package",
        "dsmmR"
      ]
    },
    {
      "page": "create_sequence",
      "title": "Simulate a sequence for states of choice.",
      "topics": [
        "create_sequence"
      ]
    },
    {
      "page": "fit_dsmm",
      "title": "Estimation of a drifting semi-Markov chain",
      "topics": [
        "dsmm_fit",
        "fit_dsmm"
      ]
    },
    {
      "page": "get_kernel",
      "title": "Obtain the Drifting semi-Markov kernel",
      "topics": [
        "get_kernel"
      ]
    },
    {
      "page": "is.dsmm",
      "title": "Check if an object has a valid 'dsmm' class",
      "topics": [
        "is.dsmm"
      ]
    },
    {
      "page": "is.dsmm_fit_nonparametric",
      "title": "Check if an object has a valid 'dsmm_fit_nonparametric' class",
      "topics": [
        "is.dsmm_fit_nonparametric"
      ]
    },
    {
      "page": "is.dsmm_fit_parametric",
      "title": "Check if an object has a valid 'dsmm_fit_parametric' class",
      "topics": [
        "is.dsmm_fit_parametric"
      ]
    },
    {
      "page": "is.dsmm_nonparametric",
      "title": "Check if an object has a valid 'dsmm_nonparametric' class",
      "topics": [
        "is.dsmm_nonparametric"
      ]
    },
    {
      "page": "is.dsmm_parametric",
      "title": "Check if an object has a valid 'dsmm_parametric' class",
      "topics": [
        "is.dsmm_parametric"
      ]
    },
    {
      "page": "lambda",
      "title": "lambda genome",
      "topics": [
        "lambda"
      ]
    },
    {
      "page": "nonparametric_dsmm",
      "title": "Non-parametric Drifting semi-Markov model specification",
      "topics": [
        "dsmm_nonparametric",
        "nonparametric",
        "nonparametric_dsmm"
      ]
    },
    {
      "page": "parametric_dsmm",
      "title": "Parametric Drifting semi-Markov model specification",
      "topics": [
        "dsmm_parametric",
        "parametric",
        "parametric_dsmm"
      ]
    },
    {
      "page": "simulate.dsmm",
      "title": "Simulate a sequence given a drifting semi-Markov kernel.",
      "topics": [
        "dsmm_simulate",
        "simulate.dsmm"
      ]
    }
  ],
  "_readme": "https://github.com/mavrogiannis-ioannis/dsmmr/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "digest",
    "DiscreteWeibull",
    "future",
    "future.apply",
    "globals",
    "listenv",
    "numDeriv",
    "parallelly",
    "Rcpp",
    "RcppArmadillo",
    "Rsolnp",
    "truncnorm"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "dsmmr",
  "_universes": [
    "mavrogiannis-ioannis"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-06-03T10:02:33.000Z",
      "distro": "noble",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "0da3b9141e4c2466b4e2572585d3d6055549ca92e17cbeaa67aa4fb7fd572cb8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-06-03T10:03:00.000Z",
      "distro": "noble",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "bf3a94e7e1608ba1551859e4a4261eae360c7c337b15cb5f4a7b9462b3e95ffa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-06-03T10:02:36.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "d4d171130d0b7c773cc486bf64dda923877ff41c7feef7983ab495c1f64c3a3a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-06-03T10:02:19.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "7ffc614aa1d37f528afb785f703c52ce2e19f9a881ab7296e105ba0d56b1e05f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.7",
      "date": "2026-06-03T10:04:06.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "eac91e173a96eeee5af88c6cef4e175baec7b136e35f7136229d6ba113c19f3a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-03T10:02:23.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "9e8b70af297bb3863a4e598240cd8614396d4905145446189d9bbb841cd358b9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-03T10:01:40.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "eeaaeccf90adb6f356adbb83c8fe40d5d4c9e6a6c1ab29c08350fb301d3f6bc7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-06-03T10:01:42.000Z",
      "commit": "66ee5795eee1ca3355196b948ea2013b45428808",
      "fileid": "751c6b8e1a0c1a8a2024067aa51ccdbf5cd93e283303e0965d858c265aeaf68c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mavrogiannis-ioannis/actions/runs/26877448708"
    }
  ]
}